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KMID : 1132720090070030171
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Genomics & Informatics
2009 Volume.7 No. 3 p.171 ~ p.174
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J2.5dPathway: A 2.5D Visualization Tool to Display Selected Nodes in Biological Pathways, in Parallel Planes
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Ham Sung-Il
Song Eun-Ha
Yang San-Duk
Thong Chin-Ting
Rhie Arang
Galbadrakh Bulgan
Lee Kyung-Eun
Park Hyun-Seok
Lee San-Ho
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Abstract
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The characteristics of metabolic pathways make them particularly amenable to layered graph drawing methods. This paper presents a visual Java-based tool for drawing and annotating biological pathways in twoand-a-half dimensions (2.5D) as an alternative to threedimensional (3D) visualizations. Such visualization allows user to display different groups of clustered nodes, in different parallel planes, and to see a detailed view of a group of objects in focus and its place in the context of the whole system. This tool is an extended version of J2dPathway.
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KEYWORD
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metabolic pathways, pathway editor, visualization
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Listed journal information
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